Tools
=====

pyGeno provides a set of tools that can be used independentely. Here you'll find goodies for translation, indexation, and more.

Progress Bar
-------------
pyGeno's awesome progress bar, with logging capabilities and remaining time estimation.

.. automodule:: tools.ProgressBar
   :members:

Useful functions
-----------------
This module is a bunch of handy bioinfo functions.

.. automodule:: tools.UsefulFunctions
   :members:

Binary sequences
-----------------
To encode sequence in binary formats

.. automodule:: tools.BinarySequence
   :members:

Segment tree
-------------
Segment trees are an optimised way to index a genome.

.. automodule:: tools.SegmentTree
   :members:

Secure memory map
------------------
A write protected memory map.

.. automodule:: tools.SecureMmap
   :members: